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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
67
total RNA-seq
57
ChIP-seq
47
WGBS
11
snATAC-seq
8
Hi-C
5
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
122
DNA accessibility
67
Transcription
57
DNA binding
47
DNA methylation
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
nucleotide modification
4
narrow histone mark
Date released
98
May, 2022
56
February, 2023
29
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
5
November, 2020
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
685
bam
bigWig
471
fastq
413
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
308
Homo sapiens
Biosample type
154
primary cell
122
tissue
33
cell line
1
in vitro differentiated cells
Organ
310
pancreas
214
epithelium
167
liver
165
heart
157
kidney
113
connective tissue
79
blood vessel
79
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
27
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
13
bone element
12
nerve
12
skeleton
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
140
AMP
28
T1D
Genome assembly (visualization)
49
hg19
24
GRCh38
Lab
142
Klaus Kaestner, Upenn
111
AMP-T2D consortium
45
Kyle Gaulton, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
25
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
txt
month_released!
July, 2019
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
12
21
7
3
2
body of pancreas
1
9
pancreas
1
3
4
1
1
endocrine pancreas
2
cell line
EndoC_BH1
17
2
1
3
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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