Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
18
ChIP-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
1
Hi-C
Assay category
33
DNA accessibility
18
DNA binding
7
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
270
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
81
May, 2020
80
October, 2019
72
May, 2021
63
August, 2017
59
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
192
bam
bigWig
173
tsv
17
bed narrowPeak
5
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
77
Homo sapiens
Biosample type
31
primary cell
23
in vitro differentiated cells
16
cell line
7
tissue
Organ
23
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
60
AMP
17
T1D
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
40
Kyle Gaulton, UCSD
32
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
vcf
target.investigated_as!
histone
BIOSAMPLE
ASSAY
77 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
Hi-C
primary cell
monocyte
13
1
1
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
17
5
pancreatic PP cell
1
cell line
EndoC_BH1
16
tissue
islet of Langerhans
4
1
pancreas
1
thymus
1
See all biosamples
Download