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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
57
ChIP-seq
31
total RNA-seq
10
MeRIP-seq
9
snATAC-seq
8
Hi-C
6
WGBS
2
Capture-C
2
RRBS
1
pCHi-C
Assay category
70
DNA accessibility
57
DNA binding
31
Transcription
8
3D chromatin structure
8
DNA methylation
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
February, 2023
29
August, 2017
24
May, 2022
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
650
bam
bigWig
400
fastq
378
tsv
214
bed narrowPeak
91
bigBed narrowPeak
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
186
Homo sapiens
Biosample type
114
tissue
37
primary cell
35
cell line
1
in vitro differentiated cells
Organ
223
kidney
187
pancreas
169
liver
133
heart
100
connective tissue
93
bone element
91
epithelium
65
adipose tissue
63
brain
46
vasculature
45
blood vessel
31
limb
28
musculature of body
24
eye
21
artery
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
25
HPAP
10
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
112
AMP-T2D consortium
33
Kyle Gaulton, UCSD
25
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
zippedFastqFolder
month_released!
April, 2018
February, 2023
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
WGBS
Capture-C
RRBS
pCHi-C
tissue
islet of Langerhans
44
21
13
4
5
3
1
pancreas
3
1
4
1
1
1
body of pancreas
9
1
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
15
1
6
pancreatic beta cell
6
1
1
pancreatic acinar cell
1
cell line
EndoC_BH1
17
2
6
1
2
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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