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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 22ChIP-seq
  • 3single cell RNA-seq
  • 2WGBS
  • 1ATAC-seq
Assay category
  • 22DNA binding
  • 3Transcription
  • 2DNA methylation
  • 1DNA accessibility
Target of assay
  • 20control
  • 1RNA binding protein
  • 1histone
  • 1histone modification
  • 1narrow histone mark
  • 1transcription factor
Date released
  • 11December, 2017
  • 4November, 2017
  • 4October, 2018
  • 3August, 2017
  • 2November, 2018
  • 1January, 2019
  • 1March, 2019
  • 1September, 2018
  • 1September, 2020
Available data
  • 187fastq
  • 178bam
  • bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 28Homo sapiens
Biosample type
  • 10tissue
  • 9in vitro differentiated cells
  • 5cell line
  • 3primary cell
  • 1stem cell
Organ
  • 7liver
  • 5embryo
  • 5pancreas
  • 3epithelium
  • 2adipose tissue
  • 2connective tissue
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 27AMP
  • 1HPAP
Genome assembly (visualization)
  • 5GRCh38
  • 5hg19
Lab
  • 26AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

28 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
tissue
body of pancreas3
islet of Langerhans11
adipose tissue1
liver1
omental fat pad1
in vitro differentiated cells
pancreatic endoderm3
Hepatic endoderm2
Posterior foregut1
definitive endodermal cell1
hepatocyte1
cell line
HepG24
GM128781
primary cell
pancreatic cell2
Langerhans cell1
stem cell
hESC1
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