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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ATAC-seq
38
ChIP-seq
16
snATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
56
DNA accessibility
38
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
37
control
1
transcription factor
Date released
39
May, 2022
22
November, 2017
16
February, 2021
10
December, 2017
3
August, 2017
3
January, 2019
1
December, 2018
1
March, 2019
1
September, 2020
Available data
166
fastq
144
bam
bigWig
92
bed narrowPeak
76
bigBed narrowPeak
40
zippedFastqFolder
11
bed bed3+
5
bed broadPeak
5
tsv
4
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
56
primary cell
26
cell line
12
tissue
2
in vitro differentiated cells
Organ
41
pancreas
40
epithelium
33
liver
3
blood
3
bodily fluid
2
embryo
Project
56
HPAP
40
AMP
Lab
56
Klaus Kaestner, Upenn
39
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
16
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
96 results
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ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell
22
Langerhans cell
16
1
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
HepG2
22
1
GM12878
3
tissue
liver
10
islet of Langerhans
1
1
in vitro differentiated cells
Hepatic endoderm
1
pancreatic endoderm
1
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