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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69single cell RNA-seq
  • 58ATAC-seq
  • 48snATAC-seq
  • 47WGBS
  • 41ChIP-seq
  • 6total RNA-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 106DNA accessibility
  • 75Transcription
  • 47DNA methylation
  • 41DNA binding
  • 13D chromatin structure
Target of assay
  • 41control
Date released
  • 158May, 2022
  • 45February, 2021
  • 22October, 2018
  • 22September, 2020
  • 6November, 2018
  • 5December, 2018
  • 4August, 2017
  • 4November, 2017
  • 2December, 2017
  • 1August, 2018
  • 1March, 2019
  • 1September, 2018
Available data
  • 455fastq
  • 373bam
  • bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 271Homo sapiens
Biosample type
  • 203primary cell
  • 60tissue
  • 7cell line
  • 1in vitro differentiated cells
Organ
  • 116pancreas
  • 86epithelium
  • 18adipose tissue
  • 18connective tissue
  • 11liver
  • 7spleen
  • 2blood
  • 2bodily fluid
Project
  • 201HPAP
  • 70AMP
Genome assembly (visualization)
  • 18hg19
Lab
  • 201Klaus Kaestner, Upenn
  • 45AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 27audit script error
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  • bigWig
BIOSAMPLE
ASSAY

271 results

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Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell2231
pancreatic beta cell1316
pancreatic acinar cell4
pancreatic cell2
tissue
islet of Langerhans196
subcutaneous adipose tissue10
omental fat pad7
spleen7
body of pancreas5
cell line
HepG241
GM128782
in vitro differentiated cells
white fat cell1
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