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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 117ChIP-seq
  • 92total RNA-seq
  • 19single cell RNA-seq
  • 4RRBS
  • 2WGBS
Assay category
  • 117DNA binding
  • 111Transcription
  • 6DNA methylation
Target of assay
  • 110control
  • 5transcription factor
  • 2RNA binding protein
  • 2histone
  • 2histone modification
  • 1broad histone mark
  • 1narrow histone mark
  • 1recombinant protein
Date released
  • 76February, 2023
  • 43November, 2017
  • 35September, 2020
  • 32August, 2017
  • 20December, 2017
  • 8February, 2018
  • 6September, 2017
  • 5October, 2018
  • 4January, 2019
  • 3October, 2017
  • 2November, 2018
Available data
  • 908fastq
  • 802bam
  • bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 233Homo sapiens
Biosample type
  • 124primary cell
  • 48cell line
  • 38tissue
  • 23in vitro differentiated cells
  • 1stem cell
Organ
  • 78pancreas
  • 68epithelium
  • 61liver
  • 9connective tissue
  • 8embryo
  • 4blood
  • 4bodily fluid
  • 3adipose tissue
  • 3brain
  • 2musculature of body
  • 1spleen
Project
  • 123AMP
  • 111HPAP
Genome assembly (visualization)
  • 13hg19
  • 9GRCh38
Lab
  • 123AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

234 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
RRBS
WGBS
primary cell
pancreatic alpha cell642
exocrine cell39
Langerhans cell19
pancreatic beta cell611
skeletal muscle myoblast1
cell line
HepG244
GM128784
tissue
liver1311
islet of Langerhans7
body of pancreas3
brain3
pancreas3
in vitro differentiated cells
adipocyte6
pancreatic endoderm6
Hepatic endoderm2
definitive endodermal cell2
primitive gut cell2
stem cell
hESC1
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