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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
4
WGBS
3
pCHi-C
3
total RNA-seq
2
ATAC-seq
1
RNA microarray
Assay category
58
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
14
narrow histone mark
Date released
40
August, 2017
18
October, 2018
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
402
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
70
Homo sapiens
Biosample type
70
tissue
1
in vitro differentiated cells
Organ
262
pancreas
223
kidney
217
epithelium
169
heart
169
liver
112
connective tissue
100
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2020
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
WGBS
pCHi-C
total RNA-seq
ATAC-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
islet of Langerhans
4
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in vitro differentiated cells
white fat cell
1
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