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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
24
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
18
October, 2018
10
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
441
bam
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
35
Homo sapiens
Biosample type
35
tissue
1
in vitro differentiated cells
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
Xin Sun, UCSD
organ_slims!
adrenal gland
target.investigated_as!
histone
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
1
1
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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