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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
3
ChIP-seq
1
RRBS
Assay category
28
DNA accessibility
19
Transcription
3
DNA binding
1
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
1
control
Date released
31
February, 2023
21
October, 2019
1
February, 2020
1
July, 2019
1
June, 2019
Available data
33
bed narrowPeak
7
bam
6
bigBed narrowPeak
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
55
Homo sapiens
Biosample type
53
tissue
2
primary cell
Organ
169
heart
132
liver
113
pancreas
111
connective tissue
100
bone element
81
vasculature
80
blood vessel
75
epithelium
66
adipose tissue
64
brain
56
artery
55
eye
32
kidney
31
limb
28
musculature of body
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
28
hg19
Lab
55
AMP-T2D consortium
files.file_type!
bigWig
lab.title!
Kyle Gaulton, UCSD
organ_slims!
large intestine
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
RRBS
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
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