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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
40
ATAC-seq
6
Hi-C
5
STARR-seq
4
ChIP-seq
1
whole genome sequencing assay
Assay category
187
Transcription
88
DNA accessibility
47
DNA methylation
6
3D chromatin structure
4
DNA binding
1
DNA sequencing
Target of assay
4
control
Date released
134
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
22
August, 2021
3
October, 2022
2
March, 2019
Available data
170
fastq
153
zippedFastqFolder
bigWig
16
tsv
14
bed narrowPeak
5
bedpe bed3+
5
hic
3
cool
1
bed broadPeak
1
bedpe
1
vcf
Organism
338
Homo sapiens
Biosample type
314
primary cell
20
cell line
4
tissue
Organ
146
pancreas
142
epithelium
17
liver
2
kidney
Project
314
HPAP
24
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
1028
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
123
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
0
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
month_released!
February, 2020
BIOSAMPLE
ASSAY
338 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
STARR-seq
ChIP-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HepG2
9
1
2
4
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
2
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