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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 37ChIP-seq
  • 29ATAC-seq
  • 18snATAC-seq
  • 17pCHi-C
  • 17total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 47DNA accessibility
  • 37DNA binding
  • 17Transcription
Target of assay
  • 20histone
  • 20histone modification
  • 12transcription factor
  • 10broad histone mark
  • 10narrow histone mark
  • 5RNA binding protein
  • 5control
Date released
  • 60May, 2021
  • 24May, 2022
  • 23February, 2023
  • 16January, 2021
Available data
  • bigWig
  • 204bam
  • 132bed narrowPeak
  • 96tsv
  • 84tagAlign
  • 24fastq
  • 6txt
  • 2bed bed3+
Organism
  • 123Homo sapiens
Biosample type
  • 52tissue
  • 42in vitro differentiated cells
  • 24primary cell
  • 5cell line
Organ
  • 51pancreas
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 67AMP
  • 56T1D
Genome assembly (visualization)
  • 18hg19
Lab
  • 1053AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 123Kyle Gaulton, UCSD
  • 47KPMP
  • 24Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 1inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

123 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans29611
pancreas41
thymus1
in vitro differentiated cells
embryonic stem cell375
primary cell
peripheral blood mononuclear cell8
CD4-positive, alpha-beta T cell2
B cell1
CD8-positive, alpha-beta T cell1
activated CD4-positive, alpha-beta T cell1
cell line
EndoC_BH132
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