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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
1
DNA accessibility
1
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
320
pancreas
223
kidney
222
epithelium
168
liver
166
heart
111
connective tissue
101
bone element
78
vasculature
77
blood vessel
63
adipose tissue
54
artery
54
eye
52
brain
28
limb
26
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
6
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
month_released!
February, 2020
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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