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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
26
ChIP-seq
4
pCHi-C
3
Hi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
35
DNA accessibility
26
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
25
control
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
10
April, 2019
February, 2021
6
May, 2019
5
December, 2017
5
March, 2020
4
July, 2019
3
February, 2018
3
February, 2020
2
June, 2019
1
May, 2021
1
October, 2019
Available data
bigWig
193
bed narrowPeak
181
bam
130
tsv
94
bigBed narrowPeak
33
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
27
fastq
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
168
Homo sapiens
Biosample type
156
tissue
8
in vitro differentiated cells
4
primary cell
Organ
317
pancreas
217
epithelium
215
kidney
166
liver
159
heart
109
connective tissue
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
1
T1D
Genome assembly (visualization)
36
GRCh38
6
hg19
Lab
167
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
February, 2021
BIOSAMPLE
ASSAY
168 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
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in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
primary cell
cardiac fibroblast
2
1
megakaryocyte
1
See all biosamples
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