Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
23
ChIP-seq
5
Hi-C
4
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
35
DNA accessibility
23
DNA binding
5
3D chromatin structure
4
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
10
April, 2019
February, 2021
7
October, 2019
6
March, 2020
6
May, 2019
4
July, 2019
3
February, 2020
2
June, 2019
1
May, 2021
Available data
192
bed narrowPeak
bigWig
165
bam
116
tsv
107
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
32
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
5
hic
4
bedpe bed3+
1
tar
Organism
167
Homo sapiens
Biosample type
156
tissue
11
primary cell
Organ
317
pancreas
217
epithelium
215
kidney
166
liver
159
heart
109
connective tissue
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
1
T1D
Genome assembly (visualization)
35
GRCh38
7
hg19
Lab
166
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
month_released!
February, 2021
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 10 more…
primary cell
endothelial cell of umbilical vein
5
2
cardiac fibroblast
2
1
megakaryocyte
1
See all biosamples
Download