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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
64
ChIP-seq
37
ATAC-seq
15
total RNA-seq
5
pCHi-C
4
RRBS
3
Hi-C
2
WGBS
Assay category
108
Transcription
64
DNA binding
37
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
43
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
92
August, 2021
37
February, 2023
25
November, 2017
15
February, 2020
11
October, 2019
10
April, 2019
February, 2021
9
May, 2019
9
October, 2017
7
March, 2020
6
July, 2019
2
June, 2019
Available data
bigWig
388
bam
382
bed narrowPeak
221
bigBed narrowPeak
142
tsv
118
tagAlign
77
bed broadPeak
68
bigBed broadPeak
65
bed bed3+
21
fastq
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
hdf5
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
223
Homo sapiens
Biosample type
219
tissue
4
primary cell
Organ
317
pancreas
217
epithelium
215
kidney
166
liver
159
heart
109
connective tissue
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
223
AMP
Genome assembly (visualization)
38
GRCh38
10
hg19
Lab
223
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
February, 2021
organ_slims!
nerve
BIOSAMPLE
ASSAY
223 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
RRBS
Hi-C
WGBS
tissue
coronary artery
2
35
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 37 more…
primary cell
cardiac fibroblast
2
1
choroid plexus epithelial cell
1
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