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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
18
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
35
DNA accessibility
18
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
18
control
3
histone
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
February, 2021
8
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
50
bed narrowPeak
43
bam
bigWig
16
tsv
13
bed bed3+
12
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hdf5
1
tar
Organism
68
Homo sapiens
Biosample type
63
tissue
5
primary cell
Organ
308
pancreas
214
epithelium
214
kidney
159
heart
144
liver
68
vasculature
67
blood vessel
66
connective tissue
53
eye
46
artery
43
brain
36
adipose tissue
24
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
skeleton
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
68
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
month_released!
February, 2021
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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primary cell
endothelial cell of umbilical vein
2
2
choroid plexus epithelial cell
1
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