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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
ATAC-seq
6
Hi-C
5
RRBS
4
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
7
DNA accessibility
7
DNA binding
6
3D chromatin structure
5
DNA methylation
5
Transcription
Target of assay
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
10
August, 2017
6
February, 2021
5
July, 2019
4
February, 2020
3
March, 2020
2
May, 2022
1
October, 2019
Available data
bigWig
114
bed narrowPeak
112
bam
93
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tsv
13
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
31
Homo sapiens
Biosample type
30
tissue
1
primary cell
Organ
265
pancreas
211
kidney
194
epithelium
149
heart
101
bone element
78
connective tissue
74
liver
61
vasculature
60
blood vessel
54
eye
47
artery
41
adipose tissue
39
brain
22
musculature of body
19
lung
16
skeleton
14
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
12
hg19
6
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
month_released!
July, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
6
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 8 more…
primary cell
skeletal muscle cell
1
See all biosamples
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