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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
251
control
105
histone
105
histone modification
59
narrow histone mark
46
broad histone mark
18
transcription factor
8
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
23
October, 2019
14
August, 2017
12
May, 2021
8
November, 2017
1
December, 2017
1
October, 2017
Available data
bigWig
369
bed narrowPeak
346
bam
167
tagAlign
102
bigBed narrowPeak
97
fastq
28
bed broadPeak
14
bigBed broadPeak
13
bed bed3+
1
tagAlign bed3+
Organism
59
Homo sapiens
Biosample type
45
tissue
11
in vitro differentiated cells
3
primary cell
Organ
connective tissue
11
brain
10
adipose tissue
8
liver
4
gonad
4
ovary
4
pancreas
2
eye
2
musculature of body
1
blood vessel
1
embryo
1
epithelium
1
limb
1
lymph node
1
vasculature
1
vein
Project
59
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
49
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
May, 2019
organ_slims!
connective tissue
nerve
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
tissue
islet of Langerhans
24
liver
8
cingulate gyrus
3
skeletal muscle tissue
2
substantia nigra
2
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
10
pancreatic endoderm
1
primary cell
endothelial cell of umbilical vein
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
See all biosamples
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