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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
12
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
1
RRBS
1
WGBS
Assay category
55
DNA accessibility
13
Transcription
12
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
9
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
43
February, 2023
18
February, 2021
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
May, 2021
Available data
143
bam
bigWig
102
bed narrowPeak
68
tsv
44
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
4
bed bed3
4
txt
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
87
Homo sapiens
Biosample type
68
tissue
10
cell line
9
primary cell
Organ
322
pancreas
222
epithelium
222
kidney
169
liver
163
heart
114
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
61
brain
55
eye
54
artery
30
limb
27
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
24
hg19
Lab
86
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bigWig
month_released!
May, 2019
BIOSAMPLE
ASSAY
87 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
1
aorta
4
1
1
1
tibial artery
5
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
megakaryocyte
1
See all biosamples
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