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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
22
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
22
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
10
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
159
bam
bigWig
108
bed narrowPeak
68
tsv
58
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
80
Homo sapiens
Biosample type
63
tissue
10
cell line
7
primary cell
Organ
319
pancreas
223
kidney
222
epithelium
169
heart
137
liver
101
bone element
99
connective tissue
80
vasculature
79
blood vessel
56
adipose tissue
56
artery
53
brain
53
eye
30
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
6
vein
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
month_released!
May, 2020
organ_slims!
intestine
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
4
2
choroid plexus epithelial cell
1
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