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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
2
Transcription
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
223
kidney
219
pancreas
169
heart
liver
143
epithelium
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
5
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2022
organ_slims!
liver
thymus
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
tissue
skeletal muscle tissue
9
4
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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