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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
Hi-C
5
RRBS
3
pCHi-C
2
total RNA-seq
Assay category
20
DNA binding
6
3D chromatin structure
5
DNA methylation
2
Transcription
Target of assay
14
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
5
March, 2020
4
December, 2018
3
November, 2018
2
February, 2020
2
June, 2019
May, 2022
1
January, 2019
1
May, 2019
Available data
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
34
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
11
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
36
Homo sapiens
Biosample type
33
tissue
3
primary cell
Organ
223
kidney
219
pancreas
169
heart
149
liver
143
epithelium
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
5
hg19
Lab
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2022
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
tissue
skeletal muscle tissue
9
4
spleen
8
1
gastrocnemius medialis
4
1
psoas muscle
2
1
gastric (mucosa of stomach)
1
+ See 2 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
See all biosamples
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