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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
8
snATAC-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
21
DNA binding
14
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
20
control
1
histone
1
histone modification
1
narrow histone mark
Date released
17
October, 2019
8
January, 2021
6
February, 2021
4
July, 2019
3
February, 2020
3
January, 2019
November, 2018
1
May, 2019
Available data
159
bam
134
bed narrowPeak
bigWig
126
bigBed narrowPeak
45
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
42
Homo sapiens
Biosample type
31
tissue
8
primary cell
3
cell line
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
168
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
11
blood
11
bodily fluid
8
embryo
7
vein
6
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
8
T1D
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
34
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigWig
month_released!
November, 2018
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
snATAC-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
3
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