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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
15
single cell RNA-seq
13
ChIP-seq
10
snATAC-seq
3
total RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
1
WGBS
Assay category
53
DNA accessibility
18
Transcription
13
DNA binding
2
3D chromatin structure
2
DNA methylation
Target of assay
13
control
Date released
35
February, 2023
19
April, 2020
11
May, 2019
October, 2019
10
February, 2021
6
August, 2021
4
March, 2020
3
February, 2020
2
July, 2019
Available data
139
bam
bigWig
99
bed narrowPeak
69
tsv
50
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
2
hic
Organism
89
Homo sapiens
Biosample type
78
tissue
10
cell line
2
primary cell
Organ
297
pancreas
215
kidney
197
epithelium
168
heart
168
liver
113
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
54
brain
51
artery
34
eye
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
14
limb
9
spleen
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
71
AMP
19
LungMap
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
71
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bigWig
month_released!
October, 2019
September, 2020
BIOSAMPLE
ASSAY
90 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
lung
9
10
1
aorta
4
2
1
1
1
ascending aorta
3
1
thoracic aorta
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
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