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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
snATAC-seq
9
ChIP-seq
9
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
13
Transcription
10
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
6
histone
6
histone modification
5
broad histone mark
3
control
1
narrow histone mark
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
17
fastq
15
bam
bigWig
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
1
hic
Organism
28
Homo sapiens
Biosample type
28
tissue
2
cell line
2
stem cell
1
primary cell
Organ
19
lung
9
brain
Project
19
LungMap
9
AMP
4
community
1
ITG
Genome assembly (visualization)
1
GRCh38
Lab
19
Xin Sun, UCSD
9
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
33 results
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Clear Filters
snATAC-seq
ChIP-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
lung
10
9
brain
9
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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