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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
59
total RNA-seq
14
ChIP-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
80
DNA accessibility
73
Transcription
14
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
13
control
1
broad histone mark
1
histone
1
histone modification
Date released
180
August, 2021
180
May, 2022
166
February, 2023
154
February, 2021
139
August, 2017
106
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
39
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
19
April, 2020
19
July, 2019
17
May, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
January, 2021
6
June, 2019
6
September, 2017
5
April, 2019
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
5
November, 2018
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
January, 2019
1
September, 2018
Available data
112
bed narrowPeak
64
xls
61
bam
bigWig
57
txt
36
tsv
24
tagAlign
12
fastq
6
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
180
Homo sapiens
Biosample type
138
tissue
22
cell line
20
in vitro differentiated cells
1
primary cell
Organ
130
kidney
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
blood
bodily fluid
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
1
spleen
Project
181
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
29
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
bodily fluid
heart
BIOSAMPLE
ASSAY
181 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
spleen
1
+ See 1 more…
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
See all biosamples
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