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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
50
total RNA-seq
33
ChIP-seq
6
snATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
Assay category
156
Transcription
80
DNA accessibility
33
DNA binding
2
3D chromatin structure
Target of assay
19
control
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
Date released
254
August, 2021
202
February, 2023
161
February, 2021
160
May, 2022
106
October, 2019
103
August, 2017
96
May, 2021
57
May, 2020
56
September, 2020
47
September, 2023
42
March, 2020
30
November, 2019
29
October, 2018
25
November, 2017
24
February, 2020
23
May, 2019
21
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
December, 2017
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2019
March, 2019
5
March, 2023
4
December, 2018
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
153
bed narrowPeak
123
bam
114
tsv
bigWig
86
tagAlign
64
xls
63
bigBed narrowPeak
57
txt
12
bed broadPeak
9
fastq
6
bigBed broadPeak
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
278
Homo sapiens
Biosample type
254
tissue
20
in vitro differentiated cells
5
cell line
Organ
130
kidney
92
heart
liver
25
brain
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
279
AMP
Genome assembly (visualization)
75
GRCh38
13
hg19
Lab
144
AMP-T2D consortium
128
Katalin Susztak, Upenn
5
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
month_released!
March, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
279 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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