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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 74ATAC-seq
  • 59total RNA-seq
  • 13ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 165Transcription
  • 80DNA accessibility
  • 13DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 12control
  • 1broad histone mark
  • 1histone
  • 1histone modification
Date released
  • 272August, 2021
  • 202February, 2023
  • 180May, 2022
  • 164February, 2021
  • 139August, 2017
  • 107October, 2019
  • 96May, 2021
  • 81May, 2020
  • 72November, 2017
  • 56September, 2020
  • 47September, 2023
  • 44March, 2020
  • 30November, 2019
  • 29October, 2018
  • 25February, 2020
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 11November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 123tsv
  • 106bed narrowPeak
  • 64xls
  • 57txt
  • 49bam
  • bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 271Homo sapiens
Biosample type
  • 229tissue
  • 22cell line
  • 20in vitro differentiated cells
  • 1primary cell
Organ
  • 130kidney
  • 92heart
  • 18liver
  • 6blood vessel
  • 6vasculature
  • 4pancreas
  • 3connective tissue
  • 3epithelium
  • 2artery
  • 1adipose tissue
Project
  • 272AMP
Genome assembly (visualization)
  • 74GRCh38
  • 14hg19
Lab
  • 128Katalin Susztak, Upenn
  • 120AMP-T2D consortium
  • 22Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

272 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG294211
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell108
adipocyte1
osteoblast1
primary cell
hepatocyte1
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