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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 74ATAC-seq
  • 59total RNA-seq
  • 13ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 165Transcription
  • 80DNA accessibility
  • 13DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 12control
  • 1broad histone mark
  • 1histone
  • 1histone modification
Date released
  • 272August, 2021
  • 202February, 2023
  • 180May, 2022
  • 164February, 2021
  • 139August, 2017
  • 107October, 2019
  • 96May, 2021
  • 81May, 2020
  • 72November, 2017
  • 56September, 2020
  • 47September, 2023
  • 44March, 2020
  • 30November, 2019
  • 29October, 2018
  • 25February, 2020
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 11November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1July, 2025
  • 1September, 2018
Available data
  • 123tsv
  • 106bed narrowPeak
  • 64xls
  • 57txt
  • 49bam
  • bigWig
  • 24tagAlign
  • 5bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 271Homo sapiens
Biosample type
  • 229tissue
  • 22cell line
  • 20in vitro differentiated cells
  • 1primary cell
Organ
  • 130kidney
  • 92heart
  • 18liver
  • 6blood vessel
  • 6vasculature
  • 4pancreas
  • 3connective tissue
  • 3epithelium
  • 2artery
  • 1adipose tissue
Project
  • 272AMP
Genome assembly (visualization)
  • 74GRCh38
  • 14hg19
Lab
  • 128Katalin Susztak, Upenn
  • 120AMP-T2D consortium
  • 22Bing Ren, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

272 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
islet of Langerhans11
pulmonary artery2
subcutaneous adipose tissue1
cell line
HepG294211
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell108
adipocyte1
osteoblast1
primary cell
hepatocyte1
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