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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
22
ChIP-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
1
Hi-C
Assay category
29
DNA accessibility
22
DNA binding
7
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
10
control
5
RNA binding protein
Date released
271
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
81
May, 2020
80
October, 2019
72
May, 2021
63
August, 2017
59
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
May, 2023
11
November, 2020
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
3
October, 2017
1
August, 2018
1
August, 2022
1
September, 2018
Available data
225
bam
bigWig
173
tsv
47
bed narrowPeak
35
fastq
30
bigBed narrowPeak
5
tagAlign
2
bed bed3+
Organism
77
Homo sapiens
Biosample type
31
primary cell
23
in vitro differentiated cells
17
cell line
6
tissue
Organ
18
pancreas
17
epithelium
4
spleen
1
bone element
1
bone marrow
1
connective tissue
1
liver
1
thymus
Project
60
AMP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
40
Kyle Gaulton, UCSD
37
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
month_released!
May, 2023
target.investigated_as!
histone
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
Hi-C
primary cell
monocyte
13
1
1
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
17
5
pancreatic PP cell
1
cell line
EndoC_BH1
16
HepG2
1
tissue
spleen
4
pancreas
1
thymus
1
See all biosamples
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