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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
38
total RNA-seq
9
ChIP-seq
Assay category
78
Transcription
9
DNA binding
Target of assay
6
histone
6
histone modification
5
broad histone mark
3
control
1
narrow histone mark
Date released
266
August, 2021
180
May, 2022
167
February, 2023
154
February, 2021
139
August, 2017
96
May, 2021
96
October, 2019
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
41
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
21
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
12
May, 2019
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
58
fastq
22
tsv
19
zippedFastqFolder
bigWig
15
bam
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
Organism
87
Homo sapiens
Biosample type
56
primary cell
31
tissue
Organ
21
brain
17
pancreas
16
epithelium
3
blood vessel
3
heart
3
limb
vasculature
2
adipose tissue
2
artery
2
connective tissue
2
musculature of body
1
eye
1
liver
1
nerve
1
spinal cord
Project
56
HPAP
31
AMP
Lab
56
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
vasculature
BIOSAMPLE
ASSAY
87 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
tissue
brain
9
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
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