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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 27snATAC-seq
  • 21ATAC-seq
  • 18single cell RNA-seq
  • 6WGBS
  • 3ChIP-seq
  • 3snDrop-seq
  • 2pCHi-C
Assay category
  • 48DNA accessibility
  • 18Transcription
  • 6DNA methylation
  • 3DNA binding
Target of assay
  • 3control
Date released
  • 272August, 2021
  • 202February, 2023
  • 180May, 2022
  • 164February, 2021
  • 139August, 2017
  • 107October, 2019
  • 96May, 2021
  • 81May, 2020
  • 72November, 2017
  • 56September, 2020
  • 47September, 2023
  • 44March, 2020
  • 30November, 2019
  • 29October, 2018
  • 25February, 2020
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 11November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 572bam
  • 559tsv
  • bigWig
  • 89txt
  • 45fastq
  • 23bed narrowPeak
  • 8tagAlign
  • 6csv
  • 4bed bedgraph
  • 2bed bed3
  • 2bed bed3+
Organism
  • 164Homo sapiens
Biosample type
  • 101tissue
  • 46primary cell
  • 13cell line
  • 4in vitro differentiated cells
Organ
  • 92bone element
  • 10artery
  • 10blood vessel
  • 10heart
  • 10vasculature
  • 8kidney
  • 8skeleton
  • 6epithelium
  • 6limb
  • 6pancreas
  • 5connective tissue
  • 3liver
Project
  • 119AMP
  • 45HPAP
Genome assembly (visualization)
  • 23hg19
  • 17GRCh38
Lab
  • 119AMP-T2D consortium
  • 45Klaus Kaestner, Upenn
Audit category:
  • 84inconsistent ontology term
  • 32audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

164 results

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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element84
kidney5
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
primary cell
Langerhans cell2712
pancreatic alpha cell6
osteoblast1
cell line
smooth muscle cell of the coronary artery82
HepG211
iPSC derived cell line1
in vitro differentiated cells
adipocyte4
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