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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
29
ATAC-seq
16
pCHi-C
7
total RNA-seq
1
DNAme array
Assay category
46
DNA binding
29
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
10
control
5
RNA binding protein
Date released
269
August, 2021
188
February, 2023
180
May, 2022
159
February, 2021
106
October, 2019
95
May, 2021
81
May, 2020
79
August, 2017
72
November, 2017
56
September, 2020
47
September, 2023
42
March, 2020
29
November, 2019
23
February, 2020
23
May, 2019
22
December, 2017
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
11
October, 2018
10
November, 2020
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
June, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2022
1
September, 2018
Available data
bigWig
306
bam
177
tsv
154
bed narrowPeak
90
tagAlign
30
fastq
21
bigBed narrowPeak
2
bed bed3+
Organism
99
Homo sapiens
Biosample type
43
in vitro differentiated cells
34
primary cell
19
cell line
3
tissue
Organ
18
pancreas
17
epithelium
3
blood
3
bodily fluid
1
bone element
1
bone marrow
connective tissue
1
spleen
1
thymus
Project
83
AMP
16
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
59
Kyle Gaulton, UCSD
40
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 9 more…
cell line
EndoC_BH1
16
GM12878
3
tissue
pancreas
1
spleen
1
thymus
1
See all biosamples
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