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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
RRBS
11
ATAC-seq
4
Hi-C
4
WGBS
3
single cell RNA-seq
1
total RNA-seq
Assay category
18
DNA methylation
11
DNA accessibility
4
3D chromatin structure
4
Transcription
Date released
260
August, 2021
180
May, 2022
171
February, 2023
161
February, 2021
90
August, 2017
90
May, 2021
58
May, 2020
56
September, 2020
47
October, 2019
47
September, 2023
44
March, 2020
28
November, 2019
24
February, 2020
22
July, 2019
19
April, 2020
17
November, 2017
16
January, 2021
15
May, 2023
6
November, 2020
6
October, 2017
5
December, 2019
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
November, 2018
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
September, 2018
Available data
bigWig
79
bam
62
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
37
Homo sapiens
Biosample type
29
tissue
8
primary cell
Organ
18
kidney
6
epithelium
5
musculature of body
4
heart
4
limb
2
brain
2
connective tissue
2
liver
2
pancreas
2
vasculature
1
adipose tissue
1
blood vessel
eye
1
pericardium
Project
37
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
23
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
eye
target.investigated_as!
control
BIOSAMPLE
ASSAY
37 results
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RRBS
ATAC-seq
Hi-C
WGBS
single cell RNA-seq
total RNA-seq
tissue
kidney
1
11
3
gastrocnemius medialis
4
heart left ventricle
1
2
adipose tissue
1
aorta
1
+ See 5 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 3 more…
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