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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
29
ATAC-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
Assay category
36
DNA binding
29
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
control
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
260
August, 2021
202
February, 2023
180
May, 2022
161
February, 2021
90
August, 2017
90
May, 2021
68
October, 2019
58
May, 2020
56
September, 2020
47
September, 2023
44
March, 2020
28
November, 2019
25
February, 2020
23
July, 2019
19
April, 2020
17
November, 2017
16
January, 2021
15
May, 2023
6
November, 2020
6
October, 2017
5
December, 2019
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
2
November, 2018
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2017
1
December, 2018
1
September, 2018
0
October, 2018
Available data
bigWig
323
bam
178
bed narrowPeak
175
tsv
89
tagAlign
45
bigBed narrowPeak
33
fastq
2
bed bed3+
Organism
90
Homo sapiens
Biosample type
37
in vitro differentiated cells
35
primary cell
16
cell line
2
tissue
Organ
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
73
AMP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
55
Kyle Gaulton, UCSD
35
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
control
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
32
5
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
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cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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