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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
41
WGBS
38
ChIP-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
79
DNA accessibility
60
Transcription
41
DNA methylation
38
DNA binding
Target of assay
32
control
6
histone
6
histone modification
5
broad histone mark
1
narrow histone mark
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
84
May, 2021
81
May, 2020
68
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
May, 2023
14
April, 2019
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
100
bam
86
fastq
80
bed narrowPeak
bigWig
36
bigBed narrowPeak
14
tagAlign
7
txt
4
bed broadPeak
2
tsv
1
bed bed3+
Organism
218
Homo sapiens
Biosample type
134
primary cell
84
tissue
Organ
115
pancreas
80
epithelium
20
liver
18
adipose tissue
18
connective tissue
9
brain
2
musculature of body
Project
134
HPAP
84
AMP
Genome assembly (visualization)
19
hg19
Lab
134
Klaus Kaestner, Upenn
40
AMP-T2D consortium
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
18
6
liver
20
subcutaneous adipose tissue
10
brain
9
body of pancreas
8
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