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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 66ChIP-seq
  • 17ATAC-seq
  • 14total RNA-seq
  • 4Hi-C
  • 4pCHi-C
  • 2DNase-seq
Assay category
  • 66DNA binding
  • 19DNA accessibility
  • 14Transcription
  • 43D chromatin structure
Target of assay
  • 39control
  • 27histone
  • 27histone modification
  • 24narrow histone mark
  • 3broad histone mark
Date released
  • 272August, 2021
  • 202February, 2023
  • 180May, 2022
  • 164February, 2021
  • 139August, 2017
  • 107October, 2019
  • 96May, 2021
  • 81May, 2020
  • 72November, 2017
  • 56September, 2020
  • 47September, 2023
  • 44March, 2020
  • 30November, 2019
  • 29October, 2018
  • 25February, 2020
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 11November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 8November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1September, 2018
Available data
  • 250bam
  • bigWig
  • 189bed narrowPeak
  • 70bigBed narrowPeak
  • 49tagAlign
  • 16tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 107Homo sapiens
Biosample type
  • 82tissue
  • 11primary cell
  • 10cell line
  • 4in vitro differentiated cells
Organ
  • 21eye
  • 17limb
  • 11blood vessel
  • 11nerve
  • 11vasculature
  • 10brain
  • 10epithelium
  • 10pancreas
  • 8kidney
  • 6vein
  • 5artery
  • 4gonad
  • 4ovary
  • 1connective tissue
  • 1heart
  • 1liver
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
Project
  • 107AMP
Genome assembly (visualization)
  • 10hg19
  • 6GRCh38
Lab
  • 107AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

107 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
DNase-seq
tissue
islet of Langerhans2113144
tibial nerve11
tibial artery5
kidney2
central medial thalamic nucleus1
primary cell
endothelial cell of umbilical vein51
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
epithelial cell of proximal tubule1
kidney glomerular epithelial cell1
cell line
Panc17
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 vector1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)11
cardiomyocytes (cardiac muscle cell)11
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