Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2640pQTL
  • 1598candidate regulatory elements
  • 1278target gene predictions
  • 929histone modifications
  • 870chromatin state
  • 801binding sites
  • 661gene expression
  • 364accessible chromatin
  • 172differential activity
  • 160eQTL
  • 119variant allelic effects
  • 48Fine-mapped variants
  • 13caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2638February, 2025
  • 2466February, 2021
  • 2327September, 2022
  • 365May, 2021
  • 339February, 2024
  • 283September, 2023
  • 268June, 2020
  • 111November, 2021
  • 108August, 2021
  • 95October, 2022
  • 90March, 2020
  • 85January, 2022
  • 85May, 2020
  • 70March, 2023
  • 46February, 2020
  • 42May, 2022
  • 40May, 2024
  • 38March, 2025
  • 33November, 2022
  • 29August, 2017
  • 29March, 2024
  • 28January, 2021
  • 13February, 2023
  • 13January, 2020
  • 9August, 2018
  • 8April, 2019
  • 5October, 2019
  • 3May, 2019
  • 2January, 2018
  • 2January, 2025
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1November, 2019
  • 1November, 2020
Available data
  • 5758bed bed3+
  • 3509tsv
  • 803bed bed9
  • bigWig
  • 108txt
  • 34bed bed9+
  • 34bigBed bed9
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 9673Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2319EpiMap
  • 1769ChIP-Atlas
  • 904ENCODE
  • 555DGA
  • 363T1D
  • 292AMP
  • 281KPMP
  • 206BLUEPRINT
  • 1744DN
  • 152 T2DKP
  • 147T2DKP
  • 90GTEx
  • 87T2D
  • 84eQTLCatalogue
  • 69CMDGA
  • 55HPAP
  • 43STARNET
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12ROADMAP
Biosample type
  • 4865tissue
  • 2271cell line
  • 2080primary cell
  • 455in vitro differentiated cells
  • 3stem cell
Organ
  • 2882vasculature
  • 2859bodily fluid
  • 2848blood
  • 2825blood vessel
  • 2657vein
  • 782epithelium
  • 616kidney
  • brain
  • 425connective tissue
  • 364musculature of body
  • 302lung
  • 278intestine
  • 235heart
  • 230limb
  • 220pancreas
  • 213embryo
  • 199skin of body
  • 171large intestine
  • 143extraembryonic component
  • 140liver
  • 114stomach
  • 94adipose tissue
  • 84mammary gland
  • 82small intestine
  • 82uterus
  • 79bone element
  • 78prostate gland
  • 73eye
  • 71placenta
  • 70artery
  • 67adrenal gland
  • 64penis
  • 62lymph node
  • 61ureter
  • 49gonad
  • 48thymus
  • 43esophagus
  • 43spinal cord
  • 33spleen
  • 26testis
  • 24lymphoid tissue
  • 23nerve
  • 22ovary
  • 22thyroid gland
  • 21lymphatic vessel
  • 19mouth
  • 14bronchus
  • 13breast
  • 13pituitary gland
  • 11bone marrow
  • 10skeleton
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9234AMP
  • 281KPMP
  • 111ENCODE
  • 32T1D
  • 13community
  • 5ITG
Genome assembly (visualization)
  • 6063hg19
  • 1396GRCh38
  • 4hg18
files.file_type!
  • bigWig
organ_slims!
  • brain
BIOSAMPLE
TYPE

9676 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
binding sites
gene expression
accessible chromatin
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart37201211322
stomach4021119131
kidney291421517111
lung33171611
cell line
HeLa-S355531
A549211911821
H1-hESC13911281
K5627231721
MCF-7962531
primary cell
monocyte28611524121
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell753013
B cell171082
CD4-positive, alpha-beta memory T cell1499
in vitro differentiated cells
neural progenitor cell55154710
hematopoietic multipotent progenitor cell1910110111
adipocyte4616113
embryonic stem cell11516
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego