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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 424ChIP-seq
  • 284ATAC-seq
  • 263single cell RNA-seq
  • 176total RNA-seq
  • 87RNA microarray
  • 73snATAC-seq
  • 56pCHi-C
  • 21Hi-C
  • 19RRBS
  • 11WGBS
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 443Transcription
  • 424DNA binding
  • 360DNA accessibility
  • 31DNA methylation
  • 213D chromatin structure
  • 1DNA sequencing
Target of assay
  • 267control
  • 139histone
  • 139histone modification
  • 70narrow histone mark
  • 69broad histone mark
  • 18transcription factor
  • 8RNA binding protein
  • 1recombinant protein
Date released
  • 268August, 2021
  • 158February, 2021
  • 146February, 2023
  • 110August, 2017
  • 97October, 2019
  • 81May, 2020
  • 78May, 2021
  • 76May, 2022
  • 72November, 2017
  • 47September, 2023
  • 40March, 2020
  • 40September, 2020
  • 24February, 2020
  • 22December, 2017
  • 22May, 2019
  • 21July, 2019
  • 19April, 2020
  • 18October, 2018
  • 15April, 2019
  • 15May, 2023
  • 9October, 2017
  • 8February, 2018
  • 8January, 2021
  • 8June, 2019
  • 8November, 2018
  • 6November, 2019
  • 5December, 2018
  • 5December, 2019
  • 5March, 2023
  • 4January, 2019
  • 1August, 2018
  • 1November, 2020
  • 1October, 2022
  • 1September, 2018
Available data
  • 2703bam
  • bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1432Homo sapiens
Biosample type
  • 873tissue
  • 321primary cell
  • 134in vitro differentiated cells
  • 104cell line
  • 7stem cell
Organ
  • pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1166AMP
  • 172HPAP
  • 47KPMP
  • 30T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 173GRCh38
  • 146hg19
Lab
  • 940AMP-T2D consortium
  • 172Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 72Kyle Gaulton, UCSD
  • 47KPMP
  • 20Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 133inconsistent ontology term
  • 38audit script error
  • 1inconsistent replicate
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

1439 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
kidney7756449611
liver631201113
bone element84
islet of Langerhans2110144
coronary artery2351
primary cell
Langerhans cell8548
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
monocyte113111
in vitro differentiated cells
embryonic stem cell3851
adipocyte20511
neural progenitor cell810
cardiomyocytes (cardiac muscle cell)1222
pancreatic endoderm6
cell line
HepG25219222
smooth muscle cell of the coronary artery28
GM128786
EndoC_BH132
EndoC-BH1
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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