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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
17
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
2
pCHi-C
2
total RNA-seq
Assay category
53
DNA accessibility
17
DNA binding
13
Transcription
Target of assay
17
control
Date released
35
February, 2023
19
April, 2020
10
February, 2021
5
October, 2019
4
December, 2018
3
November, 2018
2
August, 2021
2
February, 2020
2
March, 2020
2
May, 2019
1
January, 2019
Available data
115
bam
bigWig
77
bed narrowPeak
60
tsv
31
bigBed narrowPeak
18
fastq
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
Organism
84
Homo sapiens
Biosample type
75
tissue
10
cell line
Organ
323
pancreas
223
epithelium
222
kidney
169
heart
164
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
19
LungMap
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
66
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bigWig
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
total RNA-seq
tissue
coronary artery
35
2
1
lung
9
10
1
spleen
8
1
tibial artery
5
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
2
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