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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
8
snATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
24
DNA binding
8
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
23
control
1
histone
1
histone modification
1
narrow histone mark
Date released
17
October, 2019
8
January, 2021
4
July, 2019
3
February, 2020
3
January, 2019
3
November, 2018
1
May, 2019
Available data
168
bam
bigWig
140
bed narrowPeak
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
25
tissue
8
primary cell
6
cell line
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
8
T1D
Lab
31
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigWig
organ_slims!
skeleton
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
snATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
islet of Langerhans
1
muscle of leg
1
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
6
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