Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
21
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
9
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
Available data
153
bam
bigWig
106
bed narrowPeak
68
tsv
56
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
78
Homo sapiens
Biosample type
63
tissue
10
cell line
5
primary cell
Organ
318
pancreas
223
kidney
221
epithelium
169
heart
157
liver
101
bone element
86
connective tissue
79
vasculature
78
blood vessel
56
artery
55
eye
54
brain
46
adipose tissue
31
limb
24
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
ureter
Project
78
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
78
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
78 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
3
2
See all biosamples
Download