Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
84
RNA microarray
34
total RNA-seq
14
ATAC-seq
8
snATAC-seq
4
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
126
DNA binding
35
Transcription
23
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
101
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
95
February, 2021
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
8
February, 2023
8
January, 2021
4
November, 2018
3
January, 2019
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
May, 2021
1
October, 2019
Available data
807
bam
bigWig
525
fastq
503
bed narrowPeak
412
bigBed narrowPeak
232
tsv
88
txt
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
bed bed3
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
284
Homo sapiens
Biosample type
196
tissue
75
cell line
12
primary cell
1
in vitro differentiated cells
Organ
321
pancreas
223
kidney
222
epithelium
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
275
AMP
9
T1D
Genome assembly (visualization)
20
hg19
11
GRCh38
Lab
238
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
9
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
284 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
bone element
84
right lobe of liver
3
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 10 more…
cell line
HepG2
52
9
1
2
2
2
1
GM12878
6
primary cell
peripheral blood mononuclear cell
8
hepatocyte
1
1
Liver fetal (hepatocyte)
1
megakaryocyte
1
in vitro differentiated cells
hepatocyte
1
See all biosamples
Download