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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
84
RNA microarray
55
ATAC-seq
38
ChIP-seq
10
total RNA-seq
7
Hi-C
4
pCHi-C
2
RRBS
2
WGBS
Assay category
103
Transcription
55
DNA accessibility
38
DNA binding
7
3D chromatin structure
4
DNA methylation
Target of assay
37
control
1
histone
1
histone modification
1
narrow histone mark
Date released
102
February, 2021
92
August, 2021
44
February, 2023
18
October, 2019
10
April, 2019
8
July, 2019
7
May, 2019
6
February, 2020
5
March, 2020
2
June, 2019
1
May, 2021
Available data
385
bam
bigWig
285
bed narrowPeak
233
tsv
178
bigBed narrowPeak
88
txt
66
bed bed3+
66
bed broadPeak
66
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
4
bed bed3
3
bedpe bed3+
3
hic
Organism
295
Homo sapiens
Biosample type
281
tissue
10
cell line
4
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
294
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
25
hg19
Lab
294
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
295 results
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single cell RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
bone element
84
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
+ See 28 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
megakaryocyte
1
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