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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
2
pCHi-C
1
RRBS
1
WGBS
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
May, 2021
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
12
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
hdf5
1
tar
Organism
82
Homo sapiens
Biosample type
63
tissue
10
cell line
9
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
1
T1D
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
81
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bigWig
organ_slims!
liver
BIOSAMPLE
ASSAY
82 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
megakaryocyte
1
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