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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
25
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
12
February, 2020
12
November, 2017
8
October, 2019
3
May, 2019
3
October, 2017
2
July, 2019
2
March, 2020
1
February, 2023
Available data
74
bam
bigWig
34
bed narrowPeak
34
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
26
tsv
19
tagAlign
9
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
43
Homo sapiens
Biosample type
42
tissue
1
primary cell
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
3
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
adipose tissue
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
3
1
1
caudate nucleus
2
1
cerebellum (Hemisphere)
2
1
layer of hippocampus
3
substantia nigra
2
1
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primary cell
choroid plexus epithelial cell
1
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