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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
12
total RNA-seq
2
RRBS
2
pCHi-C
1
ATAC-seq
Assay category
25
DNA binding
12
Transcription
2
DNA methylation
1
DNA accessibility
Target of assay
25
control
21
histone
histone modification
11
narrow histone mark
10
broad histone mark
Date released
12
February, 2020
12
November, 2017
7
October, 2019
3
May, 2019
3
October, 2017
2
July, 2019
2
March, 2020
1
February, 2023
Available data
77
bam
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
42
Homo sapiens
Biosample type
41
tissue
1
primary cell
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
3
hg19
Lab
42
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
pituitary gland
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
total RNA-seq
RRBS
pCHi-C
ATAC-seq
tissue
brain
3
1
1
caudate nucleus
2
1
cerebellum (Hemisphere)
2
1
layer of hippocampus
3
substantia nigra
2
1
+ See 19 more…
primary cell
choroid plexus epithelial cell
1
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