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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
14
total RNA-seq
7
RRBS
6
Hi-C
3
pCHi-C
2
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
58
DNA binding
15
Transcription
7
DNA methylation
6
3D chromatin structure
3
DNA accessibility
Target of assay
31
control
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
Date released
25
November, 2017
14
February, 2020
13
August, 2017
10
October, 2019
9
October, 2017
7
July, 2019
5
March, 2020
4
May, 2019
2
June, 2019
2
May, 2022
1
February, 2023
Available data
300
bam
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
92
Homo sapiens
Biosample type
88
tissue
4
primary cell
Organ
321
pancreas
223
kidney
222
epithelium
169
heart
169
liver
113
connective tissue
101
bone element
81
vasculature
80
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
11
hg19
3
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
pCHi-C
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
gastrocnemius medialis
1
4
+ See 27 more…
primary cell
skeletal muscle cell
1
1
choroid plexus epithelial cell
1
skeletal muscle satellite cell
1
See all biosamples
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