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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ChIP-seq
  • 12total RNA-seq
  • 2ATAC-seq
  • 2RRBS
  • 2pCHi-C
Assay category
  • 46DNA binding
  • 12Transcription
  • 2DNA accessibility
  • 2DNA methylation
Target of assay
  • 25control
  • 21histone
  • 21histone modification
  • 11narrow histone mark
  • 10broad histone mark
Date released
  • 25November, 2017
  • 12February, 2020
  • 10October, 2019
  • 9October, 2017
  • 3May, 2019
  • 2July, 2019
  • 2March, 2020
  • 1February, 2023
Available data
  • 243bam
  • bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 64Homo sapiens
Biosample type
  • 63tissue
  • 1primary cell
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 64AMP
Genome assembly (visualization)
  • 5hg19
  • 3GRCh38
Lab
  • 64AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

64 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain911
cingulate gyrus8
layer of hippocampus6
substantia nigra41
caudate nucleus31
primary cell
choroid plexus epithelial cell1
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