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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 78ChIP-seq
  • 16ATAC-seq
  • 7total RNA-seq
  • 5pCHi-C
  • 4WGBS
  • 2Capture-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 78DNA binding
  • 16DNA accessibility
  • 7Transcription
  • 5DNA methylation
Target of assay
  • 43histone
  • 43histone modification
  • 35control
  • 28broad histone mark
  • 15narrow histone mark
Date released
  • 60August, 2017
  • 18October, 2018
  • 14February, 2023
  • 5February, 2021
  • 3August, 2021
  • 3June, 2019
  • 2February, 2020
  • 2March, 2020
  • 1August, 2018
  • 1July, 2019
  • 1May, 2021
  • 1May, 2023
  • 1November, 2019
  • 1November, 2020
  • 1October, 2019
Available data
  • 593bam
  • bigWig
  • 478tsv
  • 101fastq
  • 75bed narrowPeak
  • 28bigBed narrowPeak
  • 27bed bed3+
  • 22tagAlign
  • 10bed broadPeak
  • 9bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1bedpe bed3+
  • 1hdf5
Organism
  • 113Homo sapiens
Biosample type
  • 66tissue
  • 40in vitro differentiated cells
  • 7primary cell
  • 1stem cell
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 113AMP
  • 1T1D
Genome assembly (visualization)
  • 22hg19
  • 4GRCh38
Lab
  • 111AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 9inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

114 results

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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue353
subcutaneous adipose tissue1011
omental fat pad81
adipose tissue11111
adipose tissue(adipose white tissue)1
in vitro differentiated cells
adipocyte20511
chondrocyte5
immature adipocyte22
preadipocyte11
osteoblast1
primary cell
cardiac fibroblast21
osteoblast11
adult endothelial progenitor cell1
mesenchymal stem cell1
stem cell
mesenchymal stem cell1
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